Undergraduate Chemical and Physical Biology (CPB) Research and Thesis

Research and Thesis

Research opportunities and fellowships
Past Theses
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  • CPB Thesis 2017
    • How do you turn this thing on?: Investigating mechanisms of innate immune modulation by pathogens, probiotics, and metabolites. Rubin, Dan, PI: Kagan, Jonathan
    • The C. Elegans microRNA miR-70 Plays a Critical Role in Defense Against Starvation. Reece, Akana, PI: Soukas, Alexander
    • An Investigation of Cell-Type Specific Degenerative Mechanisms in C9ORF72 ALS. Chowdhary, Kaitavjeet, PI: Eggan, Kevin
    • Novel Small-Molecule Fusion Inhibitors Targeting the Membrane Proximal External Region of HIV-1 Envelope. Danis, David, PI: Chen, Bing
    • Studies on the induction and mode of action of a novel antimicrobial produced through an actinomycete interspecies interaction. Ndousse-Fetter, Sula, PI: Kolter, Roberto
    • Continued genomic surveillance elucidates recent evolutionary behaviors of Lassa virus in West AfricaNekoui, Mahan, PI: Sabeti, Pardis
    • Investigating the assembly of clustered protocadherins involved in dendrite self-avoidanceVogt, Bennett, PI: Gaudet, Rachelle
    • Structural and Biophysical Studies of Ligand Binding and Cytosolic Interactions in TRPA1Zurier, Hannah, PI: Gaudet, Rachelle
    • Characterizing temperature-sensitive hydrogels and exploring their use as actuators for surgical devicesDobre, Ioana, PI: Wood, Robert
  • CPB Thesis 2016
    • Expanding the Genome Editing Toolbox Through Characterization of Orthogonal CRISPR-Cas9 Nucleases Joung, Keith PI: Topkar, Ved
    • Social regulation of appetite by the neuropeptide oxytocin Kunes, Samuel PI: Wong, Sandy
    • An Investigation on SMG-8 Inhibition on PHA-4 in C. elegans Mango, Susan PI: Zhu, Meng’ou
    • Contributions of Qa-1 Restricted CD8+ Tregs to the Immune Response Against Melanoma Dougan, Stephanie PI: Li, Albert
  • CPB Thesis 2015
    • EXPLORING THE ORIGINS OF LIFE: Enhancing the Permeability of RNA Oligomers through Model Protocells Szostak, Jack PI: Mirza, Fatima (Fatima)
    • LIN28A and LIN28B play distinct and significant roles in mouse embryonic fibroblast reprogramming and induced pluripotent stem cell differentiation Daley, George PI: Tintara, Supisara (Supisara)
    • The molecular basis of capsaicin sensitivity in the nociceptor TRPV1 Gaudet, Rachelle PI: Zheng, Eric (Eric)
    • A Regulatory Model of Heat Shock by Protein Assembly Drummond, Allan PI: Rojek, Alexandra (Alexandra)
    • The Role of microRNAs in Regulating Cardiac Exercise Phenotypes Rosenzweig, Anthony PI: Wei, Xin (Paul)
    • Developing cyclic peptide inhibitors to target the KRAS-G12V/BRAF protein-protein interaction Verdine, Greg PI: Gong, Jan (Jan)
    • Thinking Outside the Cell: Nucleic Acid Content of Exosomes and Extracellular Fluid Church, George PI: Kowal, Emma (Emma)
    • Single-Molecule Characterization of Clathrin Coat and Clathrin-Coated Vesicle Disassembly Elucidates Mechanistic Functions of Auxilin Kirchhausen, Tomas PI: Bu, Kevin (Kevin)
    • Understanding Microbial Toolkits: Computational and Experimental Study of Microbial Metabolism that Impacts Human Health Balskus, Emily PI: Marks, Jonathan (Jonathan)
    • An Investigation into Novel Enhancer Chromatin Readers Shi, Yang PI: Chin, Kuo-Kai (Kuo-Kai)
    • Development and Application of Interaction Determination using Unpurified Proteins (IDUP): A Rapid Method of Drug Discovery Liu, David PI: Jain, Tara (Tara)
    • Regulation of ADP-activated signaling by hydrogen peroxide and β-arrestin-2 in vascular endothelial cells Michel, Thomas PI: Kramer, Daniel (Danny)
    • Combating Prebiotic Replication Obstruction: Design of a Method for the In Vitro Selection of Catalytic RNAs Capable of Removing 2′3′-Cyclic Phosphates Szostak, Jack PI: Pian, Julia (Julia)
    • Viral Polyprotein Processing in IMNV: Cleavage Activity of the NGN Motif Nibert, Max PI: Yang, May (May)
    • Understanding the Structural and Functional Domains of BCL11A Orkin, Stuart PI: Li, Dan (Dan)
    • Identifying New Regulators of Iron Homeostasis Fraenkel, Paula PI: Cheng, Aaron (Aaron)
  • CPB Thesis 2014
    • Evolving a Direct Inhibitor of MYC Verdine, Greg PI: Jiang, Yanting (Sam)
    • Adaptive apoptotic signaling in cancer limits the efficacy of targeted therapies Fisher, David PI: Kim, Daniel (Daniel)
    • Computational and experimental investigation of the regulation of the fold change response in TNF-induced NF-kB activation Gaudet, Suzanne PI: Chen, Weilin (Ina)
    • Cancer cells dependent on activating mutations in CTNNB1 are co-dependent on the anti-apoptotic protein Bcl-xL and are hypersensitive to the apoptosis inducer navitoclax Schreiber, Stuart PI: Ebright, Richard (Richard)
    • Where Heart Disease Meets Cancer: A Novel Role of CDKN2A/p16 in Modulating Cardiomyocyte Senescence and Cardiac Regeneration Rosenzweig, Anthony PI: Kandola, Manjinder (Manjinder)
    • Identification of telomere length regulators in Plasmodium falciparum Duraisingh, Manoj PI: Leung, Yvette (Yvette)
    • Modeling diffusion through nanoporous structures Aizenburg, Joanna PI: Lin, Kathy (Kathy)
    • Examining the Role of the Thermodynamic Driving Force on DNA Polymerase Fidelity Xie, Sunney PI: Lu, Jenny (Jenny)
    • PfRACK: A scaffolding protein of unknown function in Plasmodium falciparum Dvorin, Jeffrey PI: Pine, Stewart (Stew)
    • Structural study of a novel partial Ca2+-free linker and a positively selected variation in Protocadherin-15: Implications for hearing and cell adhesion Gaudet, Rachelle PI: Powers, Robert (Robert)
    • “An in vivo Investigation of the Local and Global Dynamics of the Bacterial
      Chromosome in Escherichia coli Zhuang, Xiaowei PI: Su, David (David)”
    • Identification of GW8510 as a Neuroprotective Agent in a Gene-Expression Based Computational Screen for Potential Therapeutics for Parkinson’s Disease Schreiber, Stuart PI: Wimalasena, Nivanthika (Nivanthika)
  • CPB Thesis 2013
    • Modification of Stress Granule Assembly During Caspase-Mediated Apoptosis Lieberman, Judy PI: Deutsch, Aaron (Aaron)
    • Ploidy-Specific Variation of ASYNAPSIS1 in Arabidopsis arenosa Bomblies, Kirsten PI: Xue, Katherine (Katherine)
    • Sensory Transient Receptor Potential Channels as Targets of Nature’s Defenses Clapham, David PI: Philipson, Benjamin (Ben)
    • Investigating the Binding of Diverse Fragments to NFkB1 (p50) and Biophysical Study of NFkB1 and the NFkB1-DNA Complex Young, Damian PI: Berry, Kayla (Kayla)
    • Alternating Antibiotic Therapy Can Slow the Evolution of Resistance Through Negative Cross-Resistance Kishony, Roy PI: Kim, Seungsoo (Seungsoo)
    • Guiding Osteogenic Differentiation of Mesenchymal Stem Cells Using a Collagen-I Peptide Mimic Mooney, PI: David Lee, Shimwoo (Shimwoo)
    • Investigation of the Biosynthetic Origins of Cremeomycin Balskus, Emily PI: Pechersky, Yakov (Yakov)
    • An experimental approach to exploring the relationship between protein stability and evolvability Liu, David PI: Yang, David (David)
    • Discovery and Applications of Naturally Supercharged Human Proteins Liu, David PI: Shih, Allen (Allen)
    • The Impact of HSP72 and IL-6 on the Regenerative Ability of Skeletal Muscle in Aged Mice Wagers, Amy PI: Wang, Stephanie (Stephanie)
    • Investigation of candidate molecular controls over segmental specificity of corticospinal motor neurons during development Macklis, Jeffrey PI: Song, Janet (Janet)
    • Mitochondrial and Reactive Oxygen Species Intracellular Asymmetry During Neutrophil Chemotaxis Irimia, Daniel PI: Patel, Sachin (Sachin)
    • Genome-wide Characterization of the Regulation of the High-Light Stress Response in the Cyanobacterium Synechococcus elongatus PCC 7942 O’Shea, Erin PI: Kennard, Andrew (Andrew)
  • CPB Thesis 2012
    • Structural studies of the 3’ terminal stem loop of 7SK snRNA D’Souza, Victoria PI: Gonzalez, Grecia (Grecia)
    • The Effect of RNA Structure on Nonenzymatic Template-Directed Polymerization in the RNA World Chen, Irene PI: Ivica, Nikola (Nikola)
    • Chromosome Dynamics in Cyanobacteria O’Shea, Erin PI: Jain, Isha (Isha)
    • The Mammalian SID-1 RNA Transporter Ortholog SidT2 is Required For Nursing and Neonatal Survival Hunter, Craig PI: Nakatsuka, Nathan (Nathan)
    • Structural insights into asymmetric motor domains of the ABC transporter TAP Gaudet, Rachelle PI: Ni, Kevin (Kevin)
    • TRANSIENT RECEPTOR POTENTIAL CHANNELS ON INTRACELLULAR MEMBRANES IN Ca2+ SIGNALING AND APOPTOTIC PATHWAYS Clapham, David PI Penumaka, Anirudh (Ani)
    • Engineering an Injectable, Macropore-Forming, Biocompatible Scaffold for the Delivery of Cancer Immunotherapies Mooney, David PI: Xu, Maria (Maria)
    • Exploring Differences in Carbon Metabolism Between Short-Fat and Long-Skinny Ridgeia piscesae Girguis, Peter PI: Yu, Chung (Tom)
    • Finding the Antidote for Fanconi Anemia Deficient Cells D’Andrea, Alan PI: Zhao, John (John)
    • The Roles of Rac1, Cdc42, and PACSIN2 in Regulation of Endothelial Nitric Oxide Synthase Michel, Thomas PI: Fryhofer, George (George)
  • CPB Thesis 2011
    • D. discoideum Integrate Chemical and Mechanical Signals to Achieve Directional Motility Gunawardena, Jeremy PI: Chattopadhyay, Arhana (Arhana)
  • Research opportunities and fellowships

    CPB concentrators are encouraged to do research in any area of the life sciences of interest. Many labs on the Cambridge campus as well as labs at Harvard Medical School or affiliated hospitals host undergraduate researchers. Talk to the ADUS, Dominic Mao, or to the Co-Head-Tutors, about how to find a lab that matches your interests. You may also contact the undergraduate science research advisor, Anna Babakhanyan.

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