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2017 Publications

46 publications listed for 2017

  1. Piechura, JR, Amarnath, K, and O’Shea, EK. (2017) Natural changes in light interact with circadian regulation at promoters to control gene expression in cyanobacteria. Elife, 6.
  2. Freifeld, L, Odstrcil, I, Frster, D, Ramirez, A, Gagnon, JA, Randlett, O, Costa, EK, Asano, S, Celiker, OT, Gao, R, Martin-Alarcon, DA, Reginato, P, Dick, C, Chen, L, Schoppik, D, Engert, F, Baier, H, and Boyden, ES. (2017) Expansion microscopy of zebrafish for neuroscience and developmental biology studies. Proc Natl Acad Sci U S A, 114(50):E10799-E10808.
  3. May, JM, Owens, TW, Mandler, MD, Simpson, BW, Lazarus, MB, Sherman, DJ, Davis, RM, Okuda, S, Massefski, W, Ruiz, N, and Kahne, D. (2017) The Antibiotic Novobiocin Binds and Activates the ATPase That Powers Lipopolysaccharide Transport. J Am Chem Soc, 139(48):17221-17224.
  4. Stirling, F, Bitzan, L, O’Keefe, S, Redfield, E, Oliver, JWK, Way, J, and Silver, PA. (2017) Rational Design of Evolutionarily Stable Microbial Kill Switches. Mol Cell, 68(4):686-697.e3.
  5. Montague, TG, and Schier, AF. (2017) Vg1-Nodal heterodimers are the endogenous inducers of mesendoderm. Elife, 6.
  6. Barber, F, Ho, PY, Murray, AW, and Amir, A. (2017) Details Matter: Noise and Model Structure Set the Relationship between Cell Size and Cell Cycle Timing. Front Cell Dev Biol, 5:92.
  7. Wallace, JL, Wienisch, M, and Murthy, VN. (2017) Development and Refinement of Functional Properties of Adult-Born Neurons. Neuron, .
  8. Kuo, J, Stirling, F, Lau, YH, Shulgina, Y, Way, JC, and Silver, PA. (2017) Synthetic genome recoding: new genetic codes for new features. Curr Genet, .
  9. Russell, JR, Cabeen, MT, Wiggins, PA, Paulsson, J, and Losick, R. (2017) Noise in a phosphorelay drives stochastic entry into sporulation in Bacillus subtilis. EMBO J, 36(19):2856-2869.
  10. Menegas, W, Uchida, N, and Watabe-Uchida, M. (2017) A Self-Killing Rabies Virus That Leaves a Trace on the DNA. Trends Neurosci, 40(10):589-591.
  11. Wang, E, and Hunter, CP. (2017) SID-1 Functions in Multiple Roles To Support Parental RNAi in Caenorhabditis elegans. Genetics, 207(2):547-557.
  12. Saak, CC, Zepeda-Rivera, MA, and Gibbs, KA. (2017) A single point mutation in a TssB/VipA homolog disrupts sheath formation in the type VI secretion system of Proteus mirabilis. PLoS One, 12(9):e0184797.
  13. Stoddard, PR, Williams, TA, Garner, E, and Baum, B. (2017) Evolution of polymer formation within the actin superfamily. Mol Biol Cell, 28(19):2461-2469.
  14. Weir, NR, Kamber, RA, Martenson, JS, and Denic, V. (2017) The AAA protein Msp1 mediates clearance of excess tail-anchored proteins from the peroxisomal membrane. Elife, 6.
  15. Diallo, A, Foster, HR, Gromek, KA, Perry, TN, Dujeancourt, A, Krasteva, PV, Gubellini, F, Falbel, TG, Burton, BM, and Fronzes, R. (2017) Bacterial transformation: ComFA is a DNA-dependent ATPase that forms complexes with ComFC and DprA. Mol Microbiol, 105(5):741-754.
  16. Mazo, C, Grimaud, J, Shima, Y, Murthy, VN, and Lau, CG. (2017) Distinct projection patterns of different classes of layer 2 principal neurons in the olfactory cortex. Sci Rep, 7(1):8282.
  17. Smolentseva, O, Gusarov, I, Gautier, L, Shamovsky, I, DeFrancesco, AS, Losick, R, and Nudler, E. (2017) Mechanism of biofilm-mediated stress resistance and lifespan extension in C. elegans. Sci Rep, 7(1):7137.
  18. Krieger, B, Qiao, M, Rousso, DL, Sanes, JR, and Meister, M. (2017) Four alpha ganglion cell types in mouse retina: Function, structure, and molecular signatures. PLoS One, 12(7):e0180091.
  19. Oteiza, P, Odstrcil, I, Lauder, G, Portugues, R, and Engert, F. (2017) A novel mechanism for mechanosensory-based rheotaxis in larval zebrafish. Nature, 547(7664):445-448.
  20. Cabeen, MT, Russell, JR, Paulsson, J, and Losick, R. (2017) Use of a microfluidic platform to uncover basic features of energy and environmental stress responses in individual cells of Bacillus subtilis. PLoS Genet, 13(7):e1006901.
  21. Kauke, MJ, Traxlmayr, MW, Parker, JA, Kiefer, JD, Knihtila, R, McGee, J, Verdine, G, Mattos, C, and Wittrup, KD. (2017) An engineered protein antagonist of K-Ras/B-Raf interaction. Sci Rep, 7(1):5831.
  22. DeFrancesco, AS, Masloboeva, N, Syed, AK, DeLoughery, A, Bradshaw, N, Li, GW, Gilmore, MS, Walker, S, and Losick, R. (2017) Genome-wide screen for genes involved in eDNA release during biofilm formation by Staphylococcus aureus. Proc Natl Acad Sci U S A, 114(29):E5969-E5978.
  23. Koppel, N, Maini, V, and Balskus, EP. (2017) Chemical transformation of xenobiotics by the human gut microbiota. Science, 356(6344).
  24. Levinson, AM, McGee, JH, Roberts, AG, Creech, GS, Wang, T, Peterson, MT, Hendrickson, RC, Verdine, GL, and Danishefsky, SJ. (2017) Total Chemical Synthesis and Folding of All-l and All-d Variants of Oncogenic KRas(G12V). J Am Chem Soc, 139(22):7632-7639.
  25. Lee, KB, Wang, J, Palme, J, Escalante-Chong, R, Hua, B, and Springer, M. (2017) Polymorphisms in the yeast galactose sensor underlie a natural continuum of nutrient-decision phenotypes. PLoS Genet, 13(5):e1006766.
  26. Daniele, JR, Chu, T, and Kunes, S. (2017) A novel proteolytic event controls Hedgehog intracellular sorting and distribution to receptive fields. Biol Open, 6(5):540-550.
  27. Daniele, JR, Baqri, RM, and Kunes, S. (2017) Analysis of axonal trafficking via a novel live-imaging technique reveals distinct hedgehog transport kinetics. Biol Open, 6(5):714-721.
  28. Douglas, SM, Chubiz, LM, Harcombe, WR, and Marx, CJ. (2017) Identification of the potentiating mutations and synergistic epistasis that enabled the evolution of inter-species cooperation. PLoS One, 12(5):e0174345.
  29. Vong, M, Ludington, JG, Ward, HD, and Nibert, ML. (2017) Complete cryspovirus genome sequences from Cryptosporidium parvum isolate Iowa. Arch Virol, .
  30. Bendesky, A, Kwon, YM, Lassance, JM, Lewarch, CL, Yao, S, Peterson, BK, He, MX, Dulac, C, and Hoekstra, HE. (2017) The genetic basis of parental care evolution in monogamous mice. Nature, 544(7651):434-439.
  31. Puszynska, AM, and O’Shea, EK. (2017) Switching of metabolic programs in response to light availability is an essential function of the cyanobacterial circadian output pathway. Elife, 6.
  32. Tilburgs, T, Meissner, TB, Ferreira, LMR, Mulder, A, Musunuru, K, Ye, J, and Strominger, JL. (2017) NLRP2 is a suppressor of NF-B signaling and HLA-C expression in human trophoblasts,. Biol Reprod, 96(4):831-842.
  33. Ferreira, LM, Meissner, TB, Tilburgs, T, and Strominger, JL. (2017) HLA-G: At the Interface of Maternal-Fetal Tolerance. Trends Immunol, 38(4):272-286.
  34. Cai, W, Sakaguchi, M, Kleinridders, A, Gonzalez-Del, G, Dreyfuss, JM, O’Neill, BT, Ramirez, AK, Pan, H, Winnay, JN, Boucher, J, Eck, MJ, and Kahn, CR. (2017) Domain-dependent effects of insulin and IGF-1 receptors on signalling and gene expression. Nat Commun, 8:14892.
  35. Mathis, MW, Mathis, A, and Uchida, N. (2017) Somatosensory Cortex Plays an Essential Role in Forelimb Motor Adaptation in Mice. Neuron, 93(6):1493-1503.e6.
  36. Jang, S, Choubey, S, Furchtgott, L, Zou, LN, Doyle, A, Menon, V, Loew, EB, Krostag, AR, Martinez, RA, Madisen, L, Levi, BP, and Ramanathan, S. (2017) Dynamics of embryonic stem cell differentiation inferred from single-cell transcriptomics show a series of transitions through discrete cell states. Elife, 6.
  37. Wzorek, JS, Lee, J, Tomasek, D, Hagan, CL, and Kahne, DE. (2017) Membrane integration of an essential -barrel protein prerequires burial of an extracellular loop. Proc Natl Acad Sci U S A, 114(10):2598-2603.
  38. Fame, RM, Dehay, C, Kennedy, H, and Macklis, JD. (2017) Subtype-Specific Genes that Characterize Subpopulations of Callosal Projection Neurons in Mouse Identify Molecularly Homologous Populations in Macaque Cortex. Cereb Cortex, 27(3):1817-1830.
  39. Bisson-Filho, AW, Hsu, YP, Squyres, GR, Kuru, E, Wu, F, Jukes, C, Sun, Y, Dekker, C, Holden, S, VanNieuwenhze, MS, Brun, YV, and Garner, EC. (2017) Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division. Science, 355(6326):739-743.
  40. Minkina, O, and Hunter, CP. (2017) Stable Heritable Germline Silencing Directs Somatic Silencing at an Endogenous Locus. Mol Cell, 65(4):659-670.e5.
  41. McElroy, KA, Jung, YL, Zee, BM, Wang, CI, Park, PJ, and Kuroda, MI. (2017) upSET, the Drosophila homologue of SET3, Is Required for Viability and the Proper Balance of Active and Repressive Chromatin Marks. G3 (Bethesda), 7(2):625-635.
  42. Scholes, C, DePace, AH. (2017) Combinatorial Gene Regulation through Kinetic Control of the Transcription Cycle. Cell Syst, 4(1):97-108.e9.
  43. Menegas, W, Babayan, BM, Uchida, N, and Watabe-Uchida, M. (2017) Opposite initialization to novel cues in dopamine signaling in ventral and posterior striatum in mice. Elife, 6.
  44. Nasr, ML, Baptista, D, Strauss, M, Sun, ZJ, Grigoriu, S, Huser, S, Plckthun, A, Hagn, F, Walz, T, Hogle, JM, and Wagner, G. (2017) Covalently circularized nanodiscs for studying membrane proteins and viral entry. Nat Methods, 14(1):49-52.
  45. Ter-Ovanesyan, D, Kowal, EJK, Regev, A, Church, GM, and Cocucci, E. (2017) Imaging of Isolated Extracellular Vesicles Using Fluorescence Microscopy. Methods Mol Biol, 1660:233-241.
  46. Kowal, EJK, Ter-Ovanesyan, D, Regev, A, and Church, GM. (2017) Extracellular Vesicle Isolation and Analysis by Western Blotting. Methods Mol Biol, 1660:143-152.